Project name: 1aqd_A-D_ITRNVPVRL

Status: done

submitted: 2023-06-02 08:52:34, status changed: 2023-06-03 01:49:45

Project settings
Peptide sequence ITRNVPVRL
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 28.6912 4.35674 14.8244 125
cluster_2.pdb ( medoid) 27.7996 4.38855 38.1721 122
cluster_3.pdb ( medoid) 25.9508 3.85344 13.0912 100
cluster_4.pdb ( medoid) 23.488 5.36444 33.6702 126
cluster_5.pdb ( medoid) 15.649 9.13796 34.2263 143
cluster_6.pdb ( medoid) 13.7791 7.03966 21.3896 97
cluster_7.pdb ( medoid) 11.6333 7.99427 18.5949 93
cluster_8.pdb ( medoid) 8.65404 8.89758 29.9638 77
cluster_9.pdb ( medoid) 5.97395 9.37403 19.2975 56
cluster_10.pdb ( medoid) 5.16613 11.8077 30.1231 61