Project name: 2b1z bound default 3 runB KILHRLLQD ss: CHHHHHHHC

Status: done

submitted: 2015-02-23 11:19:11, status changed: 2015-03-13 11:09:10

Project settings
Protein sequence(s) SLALSLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLKSLEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAH input pdb
Peptide sequence KILHRLLQD
Simulation mc cycles50
Peptide secondary structure CHHHHHHHC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 34.0814 4.95872 31.1896 169
cluster_2.pdb ( medoid) 25.1527 4.61183 16.5587 116
cluster_3.pdb ( medoid) 22.6519 4.67951 14.4531 106
cluster_4.pdb ( medoid) 21.5879 5.69763 45.4706 123
cluster_5.pdb ( medoid) 21.4238 2.42721 10.6258 52
cluster_6.pdb ( medoid) 21.3566 7.11725 39.3223 152
cluster_7.pdb ( medoid) 18.1652 7.26662 46.93 132
cluster_8.pdb ( medoid) 17.1997 3.19773 5.78704 55
cluster_9.pdb ( medoid) 3.95631 15.1656 41.3899 60
cluster_10.pdb ( medoid) 2.12771 16.4496 34.9798 35
Laboratory of Theory of Biopolymers 2015