Project name: 1n7f bound default 2 runB ATVRTYSC ss: CCCEEEEC

Status: done

submitted: 2015-02-23 11:18:28, status changed: 2015-03-13 11:09:12

Project settings
Peptide sequence ATVRTYSC
Simulation mc cycles50
Peptide secondary structure CCCEEEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 51.869 2.8919 12.9436 150
cluster_2.pdb ( medoid) 26.2988 4.82912 13.5886 127
cluster_3.pdb ( medoid) 17.3351 3.51887 17.4354 61
cluster_4.pdb ( medoid) 15.0798 8.48817 29.4623 128
cluster_5.pdb ( medoid) 14.0559 8.18164 27.637 115
cluster_6.pdb ( medoid) 11.2694 11.2694 35.0852 127
cluster_7.pdb ( medoid) 11.2298 5.96627 27.0701 67
cluster_8.pdb ( medoid) 6.819 13.4917 31.5213 92
cluster_9.pdb ( medoid) 6.20965 9.98446 22.9674 62
cluster_10.pdb ( medoid) 4.85965 14.6101 31.6114 71
Laboratory of Theory of Biopolymers 2015