Project name: Dock002

Status: done

submitted: 2018-01-01 17:47:39, status changed: 2018-01-04 10:11:18

Project settings
Simulation mc cycles200
Peptide secondary structure psipred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 22.1582 5.05457 52.9194 112
cluster_2.pdb ( medoid) 13.9357 9.75908 45.7781 136
cluster_3.pdb ( medoid) 11.6246 8.68845 45.435 101
cluster_4.pdb ( medoid) 11.5514 8.05094 31.2947 93
cluster_5.pdb ( medoid) 8.64815 12.1413 49.1195 105
cluster_6.pdb ( medoid) 7.53747 11.277 28.8333 85
cluster_7.pdb ( medoid) 6.14237 22.3041 49.5404 137
cluster_8.pdb ( medoid) 5.69097 24.4247 50.4906 139
cluster_9.pdb ( medoid) 2.85663 20.3036 45.6921 58
cluster_10.pdb ( medoid) 2.69952 12.5948 31.505 34

Laboratory of Theory of Biopolymers 2015