Project name: 1EG3 unbound default 2 run A NMTPYRSPPPYVP ss: CCCCCCCCCCCCC

Status: done

submitted: 2015-02-25 18:46:46, status changed: 2015-03-13 11:09:26

Project settings
Peptide sequence NMTPYRSPPPYVP
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 33.8069 2.42554 19.3541 82
cluster_2.pdb ( medoid) 27.4681 4.47792 24.7199 123
cluster_3.pdb ( medoid) 19.2519 10.8561 41.2425 209
cluster_4.pdb ( medoid) 18.6347 6.92256 31.2002 129
cluster_5.pdb ( medoid) 18.1344 5.95554 22.3306 108
cluster_6.pdb ( medoid) 11.0785 12.0052 33.719 133
cluster_7.pdb ( medoid) 8.44287 5.92216 24.785 50
cluster_8.pdb ( medoid) 8.15862 5.2705 25.1443 43
cluster_9.pdb ( medoid) 5.48848 9.10999 23.8746 50
cluster_10.pdb ( medoid) 4.42196 16.5085 36.8276 73
Laboratory of Theory of Biopolymers 2015