Project name: 1LVB unbound default B EATQLMN ss: CCCCCCC

Status: done

submitted: 2015-02-20 17:44:35, status changed: 2015-03-13 11:09:38

Project settings
Protein sequence(s) PRDYNPISSTICHLTNESDGHTTSLYGIGFGPFIITNKHLFRRNNGTLLVQSLHGVFKVKNTTTLQQHLIDGRDMIIIRMPKDFPPFPQKLKFREPQREERICLVTTNFQTKSMSSMVSDTSCTFPSSDGIFWKHWIQTKDGQAGSPLVSTRDGFIVGIHSASNFTNTNNYFTSVPKNFMELLTNQEAQQWVSGWRLNADSVLWGGHKVFMSKP input pdb
Peptide sequence EATQLMN
Simulation mc cycles50
Peptide secondary structure CCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
model_8 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 32.7435 6.1997 21.3144 203
cluster_2.pdb ( medoid) 28.6226 5.1358 29.196 147
cluster_3.pdb ( medoid) 23.916 3.05235 8.42378 73
cluster_4.pdb ( medoid) 14.0749 8.17057 18.2312 115
cluster_5.pdb ( medoid) 14.0246 8.84161 30.6049 124
cluster_6.pdb ( medoid) 13.228 4.76264 12.0584 63
cluster_7.pdb ( medoid) 12.7425 10.4375 39.6728 133
cluster_8.pdb ( medoid) 9.92534 8.46319 23.1287 84
cluster_9.pdb ( medoid) 4.3672 7.32735 22.6102 32
cluster_10.pdb ( medoid) 2.81901 9.22308 30.2212 26
Laboratory of Theory of Biopolymers 2015