Project name: 2v3s bound default B GRFQVT ss: CCCEEC

Status: done

submitted: 2015-02-19 18:28:32, status changed: 2015-03-13 11:09:45

Project settings
Protein sequence(s) GPISLVLRLRNSKKELNDIRFEFTPGRDTAEGVSQELISAGLVDGRDLVIVAANLQKIVEEPQSNRSVTFKLASGVEGSDIPDDGKLIGFAQLSIS input pdb
Peptide sequence GRFQVT
Simulation mc cycles50
Peptide secondary structure CCCEEC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
model_8 Download
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model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 27.8741 6.38585 32.9727 178
cluster_2.pdb ( medoid) 27.7543 5.69281 29.377 158
cluster_3.pdb ( medoid) 25.1559 5.28703 35.1002 133
cluster_4.pdb ( medoid) 23.8451 5.95509 31.1458 142
cluster_5.pdb ( medoid) 16.2509 4.79973 12.2641 78
cluster_6.pdb ( medoid) 15.2705 6.09017 23.6774 93
cluster_7.pdb ( medoid) 8.85844 6.20877 27.9993 55
cluster_8.pdb ( medoid) 8.17886 8.31412 37.1386 68
cluster_9.pdb ( medoid) 7.56142 5.95126 31.6268 45
cluster_10.pdb ( medoid) 4.16741 11.9979 27.1809 50
Laboratory of Theory of Biopolymers 2015