Project name: LQI_PU3

Status: done

submitted: 2017-12-04 16:23:42, status changed: 2017-12-04 18:27:33

Project settings
Peptide sequence LQIQSWSSSP
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 51.1842 3.47764 10.8651 178
cluster_2.pdb ( medoid) 33.7689 2.01369 9.64532 68
cluster_3.pdb ( medoid) 28.5359 4.31036 11.9637 123
cluster_4.pdb ( medoid) 27.5223 5.66813 22.248 156
cluster_5.pdb ( medoid) 23.4626 4.09162 12.6157 96
cluster_6.pdb ( medoid) 21.9602 3.96171 13.8747 87
cluster_7.pdb ( medoid) 15.3077 4.76883 16.2632 73
cluster_8.pdb ( medoid) 14.9266 7.10143 22.8021 106
cluster_9.pdb ( medoid) 13.1127 4.88076 20.4303 64
cluster_10.pdb ( medoid) 4.76216 10.2894 27.975 49

Laboratory of Theory of Biopolymers 2015