Project name: 1dkx bound default 2 runA NRLLLTG ss: CCEECCC

Status: done

submitted: 2015-02-23 11:18:24, status changed: 2015-03-13 11:09:55

Project settings
Protein sequence(s) VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHA input pdb
Peptide sequence NRLLLTG
Simulation mc cycles50
Peptide secondary structure CCEECCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 61.2572 3.41184 28.4728 209
cluster_2.pdb ( medoid) 32.282 6.96982 30.3784 225
cluster_3.pdb ( medoid) 22.3692 3.62105 19.5583 81
cluster_4.pdb ( medoid) 20.5138 5.94723 20.7899 122
cluster_5.pdb ( medoid) 14.9149 8.78314 43.4503 131
cluster_6.pdb ( medoid) 14.8907 2.55193 8.42021 38
cluster_7.pdb ( medoid) 13.9846 8.29483 31.4204 116
cluster_8.pdb ( medoid) 3.52489 9.6457 24.0496 34
cluster_9.pdb ( medoid) 3.43554 9.31441 32.7753 32
cluster_10.pdb ( medoid) 1.02832 11.6695 24.1048 12
Laboratory of Theory of Biopolymers 2015