Project name: 2o9v bound default 3 runA VPPPVPPPPS ss: CCCCCCCCCC

Status: done

submitted: 2015-02-23 11:19:16, status changed: 2015-03-13 11:10:26

Project settings
Protein sequence(s) GIDPFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKRPL input pdb
Peptide sequence VPPPVPPPPS
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 34.6431 4.76285 17.6161 165
cluster_2.pdb ( medoid) 31.4037 5.66813 28.3862 178
cluster_3.pdb ( medoid) 21.4474 6.76074 27.3672 145
cluster_4.pdb ( medoid) 18.0514 5.53972 12.2706 100
cluster_5.pdb ( medoid) 17.9906 5.00262 21.651 90
cluster_6.pdb ( medoid) 12.1921 8.8582 25.3173 108
cluster_7.pdb ( medoid) 8.89751 9.89041 27.3889 88
cluster_8.pdb ( medoid) 7.49693 6.53601 13.7982 49
cluster_9.pdb ( medoid) 7.3482 8.16527 28.2045 60
cluster_10.pdb ( medoid) 2.08867 8.13917 12.5993 17
Laboratory of Theory of Biopolymers 2015