Project name: 4i5b_ABDE_LVHFVLKK

Status: done

submitted: 2023-06-03 09:01:26, status changed: 2023-06-04 12:11:49

Project settings
Peptide sequence LVHFVLKK
Simulation mc cycles50
Peptide secondary structure psipred CCEEEECC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 38.6705 2.97384 11.3842 115
cluster_2.pdb ( medoid) 25.9347 5.28251 13.6246 137
cluster_3.pdb ( medoid) 23.4907 6.5558 19.2649 154
cluster_4.pdb ( medoid) 19.9445 6.91919 18.2832 138
cluster_5.pdb ( medoid) 19.3474 4.39335 11.1034 85
cluster_6.pdb ( medoid) 16.1843 6.73493 25.8984 109
cluster_7.pdb ( medoid) 12.7069 3.85616 14.1912 49
cluster_8.pdb ( medoid) 11.0814 4.51207 9.27229 50
cluster_9.pdb ( medoid) 10.9215 9.52248 42.2117 104
cluster_10.pdb ( medoid) 5.30509 11.1214 22.4453 59