Project name: H18E5OK6B08 3spv

Status: done

submitted: 2018-01-02 08:29:22, status changed: 2018-01-04 00:29:28

Project settings
Protein sequence(s) GSHSSMRYFDTAMSRPGRGEPRFISVVGYYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIFKTNTQTDRESLRNLLRGYYNQSSEAGSSHTLQSSMYGCDVGPDGRLLRGHNQYYAYDGKKDYIALNEDLRSWTAADTAAQIITQRRKWEAARVAEEQDRAYLEGTTCVVEEWLRRRYLEENGKDTLEERADPPKTHVTHHHPIISDHEEATLRCWALGFYPAEITTLTWQRRDGEDQTQDTELLVVETRPAGDRTFQKWAAVVVVVPSGEEQRYTCHVQQHEEGLPKPLTLLRWWEPIQRRTPKIQVVYSRHHPAENGKSNFLNCYVVSGFHPSDDIEVDLLKNGERIEKVEHSDLSFSSKDWSSFYLLYYTEFTPTEKDEYACRVNHVTLSSQPKKIVKWDRDMM input pdb
Peptide sequence FTVYVFCFL
Simulation mc cycles200
Peptide secondary structure psipred CEEEEEEEC
Unlikely to bind regions
1:B - 99:B 179:A - 276:A
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 93.0609 3.82545 17.5123 356
cluster_2.pdb ( medoid) 80.7811 1.75784 5.97554 142
cluster_3.pdb ( medoid) 39.39 3.73191 13.2308 147
cluster_4.pdb ( medoid) 35.44 4.11964 12.5042 146
cluster_5.pdb ( medoid) 28.8667 2.04388 9.0531 59
cluster_6.pdb ( medoid) 20.8456 0.527689 1.00946 11
cluster_7.pdb ( medoid) 14.1462 1.48449 4.4489 21
cluster_8.pdb ( medoid) 12.2557 3.42699 7.01728 42
cluster_9.pdb ( medoid) 9.72893 7.19503 18.3101 70
cluster_10.pdb ( medoid) 0.476171 12.6005 24.7794 6

 
Laboratory of Theory of Biopolymers 2015