Project name: 2cch bound default 3 runD HTLKGRRLVFDN ss: CCCCCCCCCCCC

Status: done

submitted: 2015-02-23 11:19:12, status changed: 2015-03-13 11:10:52

Project settings
Protein sequence(s) PDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETLN input pdb
Peptide sequence HTLKGRRLVFDN
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Representative conformations
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model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
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Trajectories
replica_1 Download
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Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 68.3732 2.28159 7.62903 156
cluster_2.pdb ( medoid) 55.8387 3.97573 11.8246 222
cluster_3.pdb ( medoid) 36.0501 3.91123 9.68167 141
cluster_4.pdb ( medoid) 34.4391 4.26841 19.2736 147
cluster_5.pdb ( medoid) 14.781 6.29186 13.4271 93
cluster_6.pdb ( medoid) 14.2703 5.04543 13.9 72
cluster_7.pdb ( medoid) 10.3342 7.64451 24.7921 79
cluster_8.pdb ( medoid) 6.93763 4.90081 12.4979 34
cluster_9.pdb ( medoid) 6.68916 3.4384 7.57148 23
cluster_10.pdb ( medoid) 2.90584 11.3564 25.3738 33
Laboratory of Theory of Biopolymers 2015