Project name: 2cch bound default 3 runD HTLKGRRLVFDN ss: CCCCCCCCCCCC

Status: done

submitted: 2015-02-23 11:19:12, status changed: 2015-03-13 11:10:52

Project settings
Peptide sequence HTLKGRRLVFDN
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
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model_3 View
model_4 View
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model_7 View
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Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 68.3732 2.28159 7.62903 156
cluster_2.pdb ( medoid) 55.8387 3.97573 11.8246 222
cluster_3.pdb ( medoid) 36.0501 3.91123 9.68167 141
cluster_4.pdb ( medoid) 34.4391 4.26841 19.2736 147
cluster_5.pdb ( medoid) 14.781 6.29186 13.4271 93
cluster_6.pdb ( medoid) 14.2703 5.04543 13.9 72
cluster_7.pdb ( medoid) 10.3342 7.64451 24.7921 79
cluster_8.pdb ( medoid) 6.93763 4.90081 12.4979 34
cluster_9.pdb ( medoid) 6.68916 3.4384 7.57148 23
cluster_10.pdb ( medoid) 2.90584 11.3564 25.3738 33
Laboratory of Theory of Biopolymers 2015