Project name: 2d5w bound default B ASKTK ss: CCEEC

Status: done

submitted: 2015-02-19 18:28:25, status changed: 2015-03-13 11:11:07

Project settings
Protein sequence(s) MGPQDNSLVIGASQEPRVLAGDFLRVISNQAIKSEIEQYLFAPFIGFNADSQNFPVLATEVPTLENGRLRVTDIGGGKKRLEMDITIRPDAKWSDGRPITTEDVAFYFEVGKAKGMPVLNPDFWERVNVRIKDARNFTLIFEPAYYYDTYGPINTYAPKHIMGPEWERVKAAARGLDPDKDAEKLNELYRNFFLKFATPQALNRGAMVYSGPFKLKRWVPGNSIEMERNPNFPIKPEGGESKYVQKVVYRFIQNTNSLLVAVIGGSIDATSSVSLTFDQGRSPQLVRRAPGRFDIWFVPGAIWEHIDINKFENCQVVKDLGLNDKRTRQAILHALNREGLVKAFFDGLQPVAHTWIAPVNPLFNPNVKKYEFDLKKAEALLAEMGWRKGPDGILQRTVNGRTVRFEIEYVTTAGNVVRERTQQFFAEDLKKIGIAVKINNAPSAVVFADEFIQRASECKWTGMFEFAWVSNLQEDGSLFQYKNLNTGAIMVPTKENNYQGQNIGGWRNDEFDRLTSQAVLEFDPERRKQLFWRAQEIWAEELPALPLYFRANPYVVRKGLVNYVASAYSGGYGYPGWNAWEIGWESRGAVKKWDQAKYALST input pdb
Peptide sequence ASKTK
Simulation mc cycles50
Peptide secondary structure CCEEC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
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model_4 View
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model_7 View
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model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
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Trajectories
replica_1 Download
replica_2 Download
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replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 26.2263 9.83744 51.4391 258
cluster_2.pdb ( medoid) 24.5105 5.01825 23.2894 123
cluster_3.pdb ( medoid) 16.3451 10.8289 43.9237 177
cluster_4.pdb ( medoid) 13.87 8.0029 39.1175 111
cluster_5.pdb ( medoid) 10.886 5.41982 30.2582 59
cluster_6.pdb ( medoid) 10.5222 6.65258 22.3483 70
cluster_7.pdb ( medoid) 8.98124 4.78776 16.2334 43
cluster_8.pdb ( medoid) 4.70962 11.8906 38.1107 56
cluster_9.pdb ( medoid) 3.72555 13.1524 33.7833 49
cluster_10.pdb ( medoid) 3.31991 16.2655 49.5417 54
Laboratory of Theory of Biopolymers 2015