Project name: 2d5w bound default B ASKTK ss: CCEEC

Status: done

submitted: 2015-02-19 18:28:25, status changed: 2015-03-13 11:11:07

Project settings
Peptide sequence ASKTK
Simulation mc cycles50
Peptide secondary structure CCEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 26.2263 9.83744 51.4391 258
cluster_2.pdb ( medoid) 24.5105 5.01825 23.2894 123
cluster_3.pdb ( medoid) 16.3451 10.8289 43.9237 177
cluster_4.pdb ( medoid) 13.87 8.0029 39.1175 111
cluster_5.pdb ( medoid) 10.886 5.41982 30.2582 59
cluster_6.pdb ( medoid) 10.5222 6.65258 22.3483 70
cluster_7.pdb ( medoid) 8.98124 4.78776 16.2334 43
cluster_8.pdb ( medoid) 4.70962 11.8906 38.1107 56
cluster_9.pdb ( medoid) 3.72555 13.1524 33.7833 49
cluster_10.pdb ( medoid) 3.31991 16.2655 49.5417 54
Laboratory of Theory of Biopolymers 2015