Project name: 2B9F unbound default A RRNLKGLNLNLH ss: CCCCCCCCCCCC

Status: done

submitted: 2015-02-20 17:44:43, status changed: 2015-03-13 11:11:17

Project settings
Peptide sequence RRNLKGLNLNLH
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
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model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 41.5691 2.69431 13.9952 112
cluster_2.pdb ( medoid) 39.3271 4.24643 14.4566 167
cluster_3.pdb ( medoid) 31.1886 4.9377 32.9322 154
cluster_4.pdb ( medoid) 27.0268 6.10505 20.3156 165
cluster_5.pdb ( medoid) 14.3389 7.25298 30.818 104
cluster_6.pdb ( medoid) 8.93225 7.61287 21.0922 68
cluster_7.pdb ( medoid) 8.44376 7.69799 22.3131 65
cluster_8.pdb ( medoid) 7.92753 7.6947 20.9195 61
cluster_9.pdb ( medoid) 3.83512 14.0804 35.2856 54
cluster_10.pdb ( medoid) 2.69517 18.5517 35.2552 50
Laboratory of Theory of Biopolymers 2015