Project name: 8d75d6c7b9b1db8

Status: done

submitted: 2018-10-12 07:51:46, status changed: 2018-10-12 09:11:05

Project settings
Protein sequence(s) AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY input pdb
Peptide sequence SILPVTR
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 196.434 0.52435 5.04469 103
cluster_2.pdb ( medoid) 47.5634 5.34025 21.989 254
cluster_3.pdb ( medoid) 35.6011 3.51113 8.64531 125
cluster_4.pdb ( medoid) 20.3248 3.73927 7.25156 76
cluster_5.pdb ( medoid) 19.4413 4.68076 12.2452 91
cluster_6.pdb ( medoid) 15.1082 7.87651 20.2496 119
cluster_7.pdb ( medoid) 9.00995 5.54942 13.448 50
cluster_8.pdb ( medoid) 7.74305 9.04036 26.1305 70
cluster_9.pdb ( medoid) 4.56242 14.0276 30.6673 64
cluster_10.pdb ( medoid) 3.27442 14.6591 33.2434 48

 
Laboratory of Theory of Biopolymers 2015