Project name: A5Full

Status: done

submitted: 2017-09-13 19:07:05, status changed: 2017-09-14 07:30:26

Project settings
Peptide sequence WHYNWQDVSDRQ
Simulation mc cycles50
Peptide secondary structure psipred CCCCHHHCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 47.8377 1.23334 2.05875 59
cluster_2.pdb ( medoid) 41.6887 0.98348 1.75545 41
cluster_3.pdb ( medoid) 29.5377 3.45321 40.7702 102
cluster_4.pdb ( medoid) 24.476 4.69848 35.3146 115
cluster_5.pdb ( medoid) 22.2625 4.89612 45.0888 109
cluster_6.pdb ( medoid) 21.8748 10.6973 64.8595 234
cluster_7.pdb ( medoid) 19.7712 4.50151 27.062 89
cluster_8.pdb ( medoid) 18.492 5.62407 15.6608 104
cluster_9.pdb ( medoid) 12.529 9.81724 46.6021 123
cluster_10.pdb ( medoid) 2.06679 11.6122 27.5001 24

Laboratory of Theory of Biopolymers 2015