Project name: 5lwm8

Status: done

submitted: 2023-06-02 07:46:02, status changed: 2023-06-02 14:30:34

Project settings
Peptide sequence RLKYTFGVD
Simulation mc cycles50
Peptide secondary structure psipred CCCEECCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 21.7798 11.9836 40.6276 261
cluster_2.pdb ( medoid) 19.7157 3.34758 16.2538 66
cluster_3.pdb ( medoid) 13.9645 13.6776 43.8806 191
cluster_4.pdb ( medoid) 13.7788 6.74951 21.048 93
cluster_5.pdb ( medoid) 10.6068 9.61651 30.5925 102
cluster_6.pdb ( medoid) 7.50132 9.06507 32.7026 68
cluster_7.pdb ( medoid) 7.32972 10.2323 37.2908 75
cluster_8.pdb ( medoid) 5.69873 6.14172 16.4902 35
cluster_9.pdb ( medoid) 4.03202 16.369 39.8717 66
cluster_10.pdb ( medoid) 3.68679 11.6633 28.3648 43