Project name: 1mfg bound default 3 runA EYLGLDVPV ss: CCCCCCEEC

Status: done

submitted: 2015-02-23 11:19:02, status changed: 2015-03-13 11:11:57

Project settings
Protein sequence(s) GSMEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVSS input pdb
Peptide sequence EYLGLDVPV
Simulation mc cycles50
Peptide secondary structure CCCCCCEEC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 56.1056 1.74671 10.4005 98
cluster_2.pdb ( medoid) 40.9155 4.74148 15.578 194
cluster_3.pdb ( medoid) 36.2914 4.40875 14.8873 160
cluster_4.pdb ( medoid) 25.506 6.15541 31.695 157
cluster_5.pdb ( medoid) 18.431 7.5959 25.5262 140
cluster_6.pdb ( medoid) 13.0078 8.37958 18.6143 109
cluster_7.pdb ( medoid) 6.44785 2.63654 7.18258 17
cluster_8.pdb ( medoid) 5.40993 12.5695 27.0318 68
cluster_9.pdb ( medoid) 3.22186 10.8633 18.5981 35
cluster_10.pdb ( medoid) 2.35878 9.32687 18.2404 22
Laboratory of Theory of Biopolymers 2015