Project name: CCL2

Status: done

submitted: 2018-01-02 12:38:44, status changed: 2018-01-02 14:27:31

Project settings
Peptide sequence NQHTPR
Simulation mc cycles50
Peptide secondary structure psipred CCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 78.3511 1.32736 16.9525 104
cluster_2.pdb ( medoid) 61.5501 2.77822 17.1036 171
cluster_3.pdb ( medoid) 25.9566 5.00836 13.9914 130
cluster_4.pdb ( medoid) 23.5021 5.61651 15.2714 132
cluster_5.pdb ( medoid) 18.7624 7.08864 25.4286 133
cluster_6.pdb ( medoid) 13.6229 5.72565 15.5753 78
cluster_7.pdb ( medoid) 9.37677 10.4514 22.4279 98
cluster_8.pdb ( medoid) 6.61282 10.4343 28.0598 69
cluster_9.pdb ( medoid) 4.60164 11.9522 21.4522 55
cluster_10.pdb ( medoid) 4.37036 6.86443 18.1871 30

Laboratory of Theory of Biopolymers 2015