Project name: 1eg4 bound default 2 runA NMTPYRSPPPYVP ss: CCCCCCCCCCCCC

Status: done

submitted: 2015-02-23 11:18:24, status changed: 2015-03-13 11:12:06

Project settings
Peptide sequence NMTPYRSPPPYVP
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 28.7163 7.03434 34.6857 202
cluster_2.pdb ( medoid) 22.5764 4.73947 33.5809 107
cluster_3.pdb ( medoid) 16.3655 5.6827 18.1162 93
cluster_4.pdb ( medoid) 16.1887 6.48602 20.6526 105
cluster_5.pdb ( medoid) 15.5798 4.8781 24.7277 76
cluster_6.pdb ( medoid) 12.1494 10.1239 24.555 123
cluster_7.pdb ( medoid) 10.9363 8.3209 28.788 91
cluster_8.pdb ( medoid) 7.78644 11.8154 25.62 92
cluster_9.pdb ( medoid) 7.08568 6.91535 20.0998 49
cluster_10.pdb ( medoid) 6.42442 9.65068 26.1111 62
Laboratory of Theory of Biopolymers 2015