Project name: 1dv8

Status: done

submitted: 2018-01-11 06:59:43, status changed: 2018-01-16 00:05:18

Project settings
Peptide sequence PRPRARS
Simulation mc cycles200
Peptide secondary structure CCCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 118.422 0.954213 10.1849 113
cluster_2.pdb ( medoid) 52.0791 2.41939 8.68307 126
cluster_3.pdb ( medoid) 50.039 4.15676 10.6248 208
cluster_4.pdb ( medoid) 39.0312 3.79183 10.3905 148
cluster_5.pdb ( medoid) 23.2332 4.47635 10.3198 104
cluster_6.pdb ( medoid) 19.7925 3.23354 7.67265 64
cluster_7.pdb ( medoid) 16.6054 3.37239 21.1652 56
cluster_8.pdb ( medoid) 14.1546 8.4778 18.009 120
cluster_9.pdb ( medoid) 6.46701 4.79356 8.25354 31
cluster_10.pdb ( medoid) 6.19122 4.84557 11.2664 30

Laboratory of Theory of Biopolymers 2015