Project name: 1er8 bound default 2 runE UPFHLLVY ss: CCCCCCEC

Status: done

submitted: 2015-02-23 11:18:25, status changed: 2015-03-13 11:12:28

Project settings
Protein sequence(s) STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK input pdb
Peptide sequence UPFHLLVY
Simulation mc cycles50
Peptide secondary structure CCCCCCEC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
model_8 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
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model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 44.3842 4.75394 31.4008 211
cluster_2.pdb ( medoid) 39.7855 3.39319 11.8865 135
cluster_3.pdb ( medoid) 16.865 3.91342 20.1113 66
cluster_4.pdb ( medoid) 15.8039 6.7072 35.475 106
cluster_5.pdb ( medoid) 14.7762 11.8434 32.6804 175
cluster_6.pdb ( medoid) 7.48585 13.0914 39.6286 98
cluster_7.pdb ( medoid) 6.88711 15.2459 39.6835 105
cluster_8.pdb ( medoid) 4.76413 8.60598 30.4381 41
cluster_9.pdb ( medoid) 3.72976 6.97095 29.8963 26
cluster_10.pdb ( medoid) 2.66734 13.8715 32.2169 37
Laboratory of Theory of Biopolymers 2015