Project name: 4i5b_ABDE_YHPSPR

Status: done

submitted: 2023-06-03 09:02:41, status changed: 2023-06-04 12:03:26

Project settings
Peptide sequence YHPSPR
Simulation mc cycles50
Peptide secondary structure psipred CCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 50.871 2.18199 10.1793 111
cluster_2.pdb ( medoid) 37.6652 3.26561 10.2902 123
cluster_3.pdb ( medoid) 32.9884 4.0014 12.0116 132
cluster_4.pdb ( medoid) 19.5521 5.88172 27.2393 115
cluster_5.pdb ( medoid) 18.6177 9.18481 37.6686 171
cluster_6.pdb ( medoid) 13.706 7.15016 14.4981 98
cluster_7.pdb ( medoid) 12.2861 4.55799 13.9646 56
cluster_8.pdb ( medoid) 8.7168 13.0782 29.1903 114
cluster_9.pdb ( medoid) 6.57706 6.84197 14.3096 45
cluster_10.pdb ( medoid) 4.79967 7.29218 18.4398 35