Project name: 2otu bound default 2 runEF QQQQQQQQQQG ss: CCCCCCCCCEC

Status: done

submitted: 2015-02-23 11:18:42, status changed: 2015-03-13 11:12:44

Project settings
Protein sequence(s) MQLVLTQSSSASFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVQVQLQESGGGLVQPGGSLKLSCAASGFTFRDYYMYWVRQTPEKRLEWVAFISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARGRGYVWFAYWGQGTTVTVSS input pdb
Peptide sequence QQQQQQQQQQG
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCEC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
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model_6 View
model_7 View
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model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 42.092 1.85308 14.2837 78
cluster_2.pdb ( medoid) 30.7023 7.19815 38.7599 221
cluster_3.pdb ( medoid) 18.0313 11.6464 41.4483 210
cluster_4.pdb ( medoid) 15.682 8.48105 27.1032 133
cluster_5.pdb ( medoid) 11.906 5.96339 36.9994 71
cluster_6.pdb ( medoid) 9.8032 8.56863 33.0775 84
cluster_7.pdb ( medoid) 6.16286 13.1433 38.4261 81
cluster_8.pdb ( medoid) 4.93778 8.50584 30.175 42
cluster_9.pdb ( medoid) 4.02574 10.1845 27.7935 41
cluster_10.pdb ( medoid) 2.49306 15.6434 39.8109 39
Laboratory of Theory of Biopolymers 2015