Project name: 95db48faaf8755e

Status: done

submitted: 2018-10-12 07:47:50, status changed: 2018-10-12 09:06:36

Project settings
Protein sequence(s) AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY input pdb
Peptide sequence SILPVTR
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 30.8649 5.02188 11.5149 155
cluster_2.pdb ( medoid) 27.7952 4.38925 15.3719 122
cluster_3.pdb ( medoid) 27.2281 5.0683 13.4534 138
cluster_4.pdb ( medoid) 26.3836 5.34423 22.4615 141
cluster_5.pdb ( medoid) 18.4798 6.87236 15.1751 127
cluster_6.pdb ( medoid) 9.85782 9.33269 25.7756 92
cluster_7.pdb ( medoid) 6.88642 9.14844 27.0205 63
cluster_8.pdb ( medoid) 6.57222 9.73795 23.252 64
cluster_9.pdb ( medoid) 6.57079 9.89227 23.8061 65
cluster_10.pdb ( medoid) 3.1269 10.5536 26.9908 33

 
Laboratory of Theory of Biopolymers 2015