Project name: 2p1k bound default A SATSAKATQTD ss: CCEEEEEEECC

Status: done

submitted: 2015-02-19 18:28:30, status changed: 2015-03-13 11:12:54

Project settings
Protein sequence(s) DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG input pdb
Peptide sequence SATSAKATQTD
Simulation mc cycles50
Peptide secondary structure CCEEEEEEECC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 23.913 4.85091 26.4892 116
cluster_2.pdb ( medoid) 23.2351 4.47598 18.1146 104
cluster_3.pdb ( medoid) 17.9152 5.58184 16.324 100
cluster_4.pdb ( medoid) 17.8386 5.88612 21.2184 105
cluster_5.pdb ( medoid) 15.7041 7.89605 20.5854 124
cluster_6.pdb ( medoid) 14.3205 8.51924 21.6832 122
cluster_7.pdb ( medoid) 11.7758 11.719 24.2502 138
cluster_8.pdb ( medoid) 8.42439 9.49623 21.6988 80
cluster_9.pdb ( medoid) 6.40523 12.9582 26.9305 83
cluster_10.pdb ( medoid) 2.00659 13.954 28.1876 28
Laboratory of Theory of Biopolymers 2015