Project name: 1aqd_A-D_NNYNPR

Status: done

submitted: 2023-06-02 08:54:34, status changed: 2023-06-03 01:40:46

Project settings
Peptide sequence NNYNPR
Simulation mc cycles50
Peptide secondary structure psipred CCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 32.5874 4.75644 14.125 155
cluster_2.pdb ( medoid) 30.3775 4.80619 14.7641 146
cluster_3.pdb ( medoid) 30.1849 6.06264 23.2769 183
cluster_4.pdb ( medoid) 21.0135 8.99423 41.7526 189
cluster_5.pdb ( medoid) 16.6774 3.47776 12.9351 58
cluster_6.pdb ( medoid) 14.132 3.82111 12.0678 54
cluster_7.pdb ( medoid) 6.7732 8.41552 26.6592 57
cluster_8.pdb ( medoid) 5.4131 14.04 38.4374 76
cluster_9.pdb ( medoid) 4.64704 9.25319 41.9678 43
cluster_10.pdb ( medoid) 4.4473 8.76937 17.0454 39