Project name: Trunc_A5

Status: done

submitted: 2017-09-13 18:59:37, status changed: 2017-09-14 03:14:26

Project settings
Protein sequence(s) DIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECEVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYIHWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP input pdb
Peptide sequence WQDVSDRQ
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 35.8293 3.54459 25.6003 127
cluster_2.pdb ( medoid) 24.3888 5.49432 30.1006 134
cluster_3.pdb ( medoid) 22.6596 7.36994 32.3554 167
cluster_4.pdb ( medoid) 22.4265 6.37638 22.718 143
cluster_5.pdb ( medoid) 10.9413 11.6988 49.5621 128
cluster_6.pdb ( medoid) 9.06519 7.83216 17.6594 71
cluster_7.pdb ( medoid) 8.13078 4.6736 12.4165 38
cluster_8.pdb ( medoid) 7.09917 11.2689 32.6195 80
cluster_9.pdb ( medoid) 3.88532 17.2444 35.4596 67
cluster_10.pdb ( medoid) 3.0166 14.9174 29.8021 45

 
Laboratory of Theory of Biopolymers 2015