Project name: 1I2H unbound default 3 run A TPPSPF ss: CCCCCC

Status: done

submitted: 2015-02-25 18:47:29, status changed: 2015-03-13 11:13:22

Project settings
Protein sequence(s) EFMGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSKMELTSTPSGDLQSPLTPE input pdb
Peptide sequence TPPSPF
Simulation mc cycles50
Peptide secondary structure CCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 62.5252 1.53538 7.87712 96
cluster_2.pdb ( medoid) 39.3278 3.05127 25.0347 120
cluster_3.pdb ( medoid) 29.8006 6.14083 23.0304 183
cluster_4.pdb ( medoid) 21.8375 5.58671 23.9228 122
cluster_5.pdb ( medoid) 19.6259 7.64298 45.0547 150
cluster_6.pdb ( medoid) 14.9638 8.88813 29.8864 133
cluster_7.pdb ( medoid) 11.9485 6.6954 18.2528 80
cluster_8.pdb ( medoid) 9.91265 2.21939 7.36288 22
cluster_9.pdb ( medoid) 6.03334 10.1105 32.4364 61
cluster_10.pdb ( medoid) 1.89865 17.3808 51.1372 33
Laboratory of Theory of Biopolymers 2015