Project name: 2qos bound default 3 runC LRYDSTAERLY ss: CCEECCCCEEC

Status: done

submitted: 2015-02-23 11:19:18, status changed: 2015-03-13 11:13:25

Project settings
Peptide sequence LRYDSTAERLY
Simulation mc cycles50
Peptide secondary structure CCEECCCCEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 65.7276 1.71922 9.02693 113
cluster_2.pdb ( medoid) 41.7763 5.09858 9.25506 213
cluster_3.pdb ( medoid) 40.5842 4.68163 15.4414 190
cluster_4.pdb ( medoid) 34.8987 2.80812 10.4182 98
cluster_5.pdb ( medoid) 22.5558 3.7241 14.847 84
cluster_6.pdb ( medoid) 21.362 5.33658 14.5767 114
cluster_7.pdb ( medoid) 9.68204 4.85435 14.5202 47
cluster_8.pdb ( medoid) 8.59052 7.56648 19.8477 65
cluster_9.pdb ( medoid) 5.42399 6.26845 12.6625 34
cluster_10.pdb ( medoid) 3.78784 11.0881 25.1362 42
Laboratory of Theory of Biopolymers 2015