Project name: 1eg4 bound default 3 runA NMTPYRSPPPYVP ss: CCCCCCCCCCCCC

Status: done

submitted: 2015-02-23 11:18:58, status changed: 2015-03-13 11:13:36

Project settings
Protein sequence(s) PASQHFLSTSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADLNNVRFSAYRTAMKLRRLQKALCLDLLSLSAACDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRLEPQSMVWLPVLHRVAAAET input pdb
Peptide sequence NMTPYRSPPPYVP
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
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model_4 View
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model_7 View
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model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
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Trajectories
replica_1 Download
replica_2 Download
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replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 39.4417 2.02831 4.94449 80
cluster_2.pdb ( medoid) 22.3922 4.51051 20.3765 101
cluster_3.pdb ( medoid) 18.5831 14.5831 37.2039 271
cluster_4.pdb ( medoid) 15.9287 11.2376 27.4451 179
cluster_5.pdb ( medoid) 14.6024 9.51898 36.7069 139
cluster_6.pdb ( medoid) 12.9284 1.62433 2.69142 21
cluster_7.pdb ( medoid) 11.4313 3.41169 8.70009 39
cluster_8.pdb ( medoid) 7.65827 9.14045 30.2128 70
cluster_9.pdb ( medoid) 5.17065 10.8304 23.0884 56
cluster_10.pdb ( medoid) 4.98864 8.82005 23.6187 44
Laboratory of Theory of Biopolymers 2015