Project name: 1eg4 bound default 3 runA NMTPYRSPPPYVP ss: CCCCCCCCCCCCC

Status: done

submitted: 2015-02-23 11:18:58, status changed: 2015-03-13 11:13:36

Project settings
Peptide sequence NMTPYRSPPPYVP
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 39.4417 2.02831 4.94449 80
cluster_2.pdb ( medoid) 22.3922 4.51051 20.3765 101
cluster_3.pdb ( medoid) 18.5831 14.5831 37.2039 271
cluster_4.pdb ( medoid) 15.9287 11.2376 27.4451 179
cluster_5.pdb ( medoid) 14.6024 9.51898 36.7069 139
cluster_6.pdb ( medoid) 12.9284 1.62433 2.69142 21
cluster_7.pdb ( medoid) 11.4313 3.41169 8.70009 39
cluster_8.pdb ( medoid) 7.65827 9.14045 30.2128 70
cluster_9.pdb ( medoid) 5.17065 10.8304 23.0884 56
cluster_10.pdb ( medoid) 4.98864 8.82005 23.6187 44
Laboratory of Theory of Biopolymers 2015