Project name: 1ddv bound default 2 runA TPPSPF ss: CCCCCC

Status: done

submitted: 2015-02-23 11:18:24, status changed: 2015-03-13 11:13:55

Project settings
Protein sequence(s) IFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEA input pdb
Peptide sequence TPPSPF
Simulation mc cycles50
Peptide secondary structure CCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 81.9989 1.26831 11.1854 104
cluster_2.pdb ( medoid) 35.5697 3.03629 15.6416 108
cluster_3.pdb ( medoid) 31.3769 4.62124 15.8427 145
cluster_4.pdb ( medoid) 23.2902 6.26874 22.2049 146
cluster_5.pdb ( medoid) 17.97 6.62215 23.8592 119
cluster_6.pdb ( medoid) 13.5614 9.58601 29.6392 130
cluster_7.pdb ( medoid) 10.6918 8.97884 31.6406 96
cluster_8.pdb ( medoid) 10.5359 5.6948 20.8572 60
cluster_9.pdb ( medoid) 7.8294 6.25846 14.8845 49
cluster_10.pdb ( medoid) 7.38891 5.81954 16.1224 43
Laboratory of Theory of Biopolymers 2015