Project name: 2DVJ unbound default 2 run A PPPALPPKK ss: CCCCCCCCC

Status: done

submitted: 2015-02-25 18:46:45, status changed: 2015-03-13 11:14:02

Project settings
Peptide sequence PPPALPPKK
Simulation mc cycles50
Peptide secondary structure CCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
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model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 56.7463 3.36586 8.47858 191
cluster_2.pdb ( medoid) 28.5811 4.54846 12.116 130
cluster_3.pdb ( medoid) 26.6685 4.23721 12.8836 113
cluster_4.pdb ( medoid) 22.903 6.33104 28.326 145
cluster_5.pdb ( medoid) 13.8397 6.64755 13.352 92
cluster_6.pdb ( medoid) 11.2089 11.1518 39.1398 125
cluster_7.pdb ( medoid) 5.51934 9.24023 16.4749 51
cluster_8.pdb ( medoid) 5.08046 12.5973 37.5887 64
cluster_9.pdb ( medoid) 4.30263 6.97248 25.6806 30
cluster_10.pdb ( medoid) 3.7182 15.8679 35.857 59
Laboratory of Theory of Biopolymers 2015