Project name: 1elw bound default 3 runA GPTIEEVD ss: CCCCCCCC

Status: done

submitted: 2015-02-23 11:18:59, status changed: 2015-03-13 11:14:12

Project settings
Protein sequence(s) EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR input pdb
Peptide sequence GPTIEEVD
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 65.7266 2.73862 12.4194 180
cluster_2.pdb ( medoid) 31.6526 4.73895 25.4946 150
cluster_3.pdb ( medoid) 27.0585 3.84352 13.8763 104
cluster_4.pdb ( medoid) 25.2313 2.8536 7.68727 72
cluster_5.pdb ( medoid) 23.5937 6.10333 14.4703 144
cluster_6.pdb ( medoid) 23.5226 5.01646 10.9383 118
cluster_7.pdb ( medoid) 15.3572 4.493 13.5438 69
cluster_8.pdb ( medoid) 11.5312 8.58541 18.3837 99
cluster_9.pdb ( medoid) 9.37818 4.26522 9.53096 40
cluster_10.pdb ( medoid) 2.94375 8.15286 16.1424 24
Laboratory of Theory of Biopolymers 2015