Project name: 1mvu bound default AB VVQEALDKAREGR ss: CHHHHHHHHHHCC

Status: done

submitted: 2015-02-19 18:28:15, status changed: 2015-03-13 11:14:25

Project settings
Protein sequence(s) DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTKLEPEVQLQQSGAELVRPGASVKLSCTASGFNIKDDFMHWVKQRPEQGLEWIGRIDPANDNTKYAPKFQDKATIIADTSSNTAYLQLSSLTSEDTAVYYCARRELYSYYSPLDVWGAGTTVTVPS input pdb
Peptide sequence VVQEALDKAREGR
Simulation mc cycles50
Peptide secondary structure CHHHHHHHHHHCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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model_7 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 48.267 2.4033 9.39536 116
cluster_2.pdb ( medoid) 46.7172 4.7734 30.3244 223
cluster_3.pdb ( medoid) 21.4834 9.82154 30.097 211
cluster_4.pdb ( medoid) 14.802 7.56655 24.6719 112
cluster_5.pdb ( medoid) 14.119 4.10794 16.6833 58
cluster_6.pdb ( medoid) 10.8827 7.07544 16.7789 77
cluster_7.pdb ( medoid) 8.39163 9.77164 27.4164 82
cluster_8.pdb ( medoid) 4.00185 11.2448 20.3495 45
cluster_9.pdb ( medoid) 3.33885 15.5742 30.7649 52
cluster_10.pdb ( medoid) 1.82611 13.1427 22.6028 24
Laboratory of Theory of Biopolymers 2015