Project name: 1d4t bound default 2 runA KSLTIYAQVQK ss: CCCEEEECECC

Status: done

submitted: 2015-02-23 11:18:24, status changed: 2015-03-13 11:14:40

Project settings
Peptide sequence KSLTIYAQVQK
Simulation mc cycles50
Peptide secondary structure CCCEEEECECC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 48.3219 4.36655 15.1779 211
cluster_2.pdb ( medoid) 35.2935 3.20172 26.6721 113
cluster_3.pdb ( medoid) 31.4663 4.73523 33.6865 149
cluster_4.pdb ( medoid) 19.2183 3.69439 14.461 71
cluster_5.pdb ( medoid) 19.0205 5.6255 23.4727 107
cluster_6.pdb ( medoid) 12.4231 11.1888 34.248 139
cluster_7.pdb ( medoid) 8.44457 7.57884 21.6435 64
cluster_8.pdb ( medoid) 6.74493 11.5642 27.4393 78
cluster_9.pdb ( medoid) 3.54843 14.3726 32.2886 51
cluster_10.pdb ( medoid) 1.86343 9.12298 16.7278 17
Laboratory of Theory of Biopolymers 2015