Project name: 1OEW unbound default A UPFHLLVY ss: CCCCCCEC

Status: done

submitted: 2015-02-20 17:44:33, status changed: 2015-03-13 11:15:09

Project settings
Peptide sequence UPFHLLVY
Simulation mc cycles50
Peptide secondary structure CCCCCCEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 43.1178 4.40653 10.1726 190
cluster_2.pdb ( medoid) 36.7004 2.83376 12.8954 104
cluster_3.pdb ( medoid) 26.0692 4.0661 25.3669 106
cluster_4.pdb ( medoid) 20.8076 6.00743 19.147 125
cluster_5.pdb ( medoid) 15.9881 8.63143 40.212 138
cluster_6.pdb ( medoid) 10.6573 4.87931 26.3472 52
cluster_7.pdb ( medoid) 8.97181 10.9231 36.3875 98
cluster_8.pdb ( medoid) 8.96902 10.4805 26.6832 94
cluster_9.pdb ( medoid) 3.70712 10.79 25.654 40
cluster_10.pdb ( medoid) 3.61638 14.6555 33.9509 53
Laboratory of Theory of Biopolymers 2015