Project name: 2foj bound default 3 runA GARAHSS ss: CCCCECC

Status: done

submitted: 2015-02-23 11:19:14, status changed: 2015-03-13 11:15:17

Project settings
Peptide sequence GARAHSS
Simulation mc cycles50
Peptide secondary structure CCCCECC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 22.6865 6.83224 33.2119 155
cluster_2.pdb ( medoid) 18.9466 4.2224 28.1736 80
cluster_3.pdb ( medoid) 15.0203 9.65362 40.6968 145
cluster_4.pdb ( medoid) 14.2477 4.98325 11.9531 71
cluster_5.pdb ( medoid) 12.4511 10.0393 28.9224 125
cluster_6.pdb ( medoid) 11.5855 11.5662 39.5292 134
cluster_7.pdb ( medoid) 9.86394 9.73242 31.8014 96
cluster_8.pdb ( medoid) 5.87223 12.4314 30.0384 73
cluster_9.pdb ( medoid) 5.8568 9.73228 31.2096 57
cluster_10.pdb ( medoid) 4.50198 14.216 29.4387 64
Laboratory of Theory of Biopolymers 2015