Project name: 2B9F unbound default 2 run A RRNLKGLNLNLH ss: CCCCCCCCCCCC

Status: done

submitted: 2015-02-25 18:46:53, status changed: 2015-03-13 11:15:24

Project settings
Peptide sequence RRNLKGLNLNLH
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 31.8481 3.64229 26.5517 116
cluster_2.pdb ( medoid) 22.2729 5.92649 35.1219 132
cluster_3.pdb ( medoid) 21.1363 11.8753 40.6965 251
cluster_4.pdb ( medoid) 15.1324 4.95625 15.835 75
cluster_5.pdb ( medoid) 13.2562 5.88404 29.7238 78
cluster_6.pdb ( medoid) 10.8846 8.54421 32.697 93
cluster_7.pdb ( medoid) 8.28419 10.6226 28.7272 88
cluster_8.pdb ( medoid) 7.40539 13.2336 41.1756 98
cluster_9.pdb ( medoid) 5.0558 6.92274 34.4673 35
cluster_10.pdb ( medoid) 4.81945 7.05475 28.6263 34
Laboratory of Theory of Biopolymers 2015