Project name: 2vj0 bound default A PKGWVTFE ss: CCCCCCCC

Status: done

submitted: 2015-02-19 18:28:32, status changed: 2015-03-13 11:15:42

Project settings
Peptide sequence PKGWVTFE
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 34.3728 4.36392 26.0328 150
cluster_2.pdb ( medoid) 13.5902 7.21109 17.6077 98
cluster_3.pdb ( medoid) 12.9146 9.13696 25.0952 118
cluster_4.pdb ( medoid) 12.1673 13.9719 42.3846 170
cluster_5.pdb ( medoid) 11.6987 6.66739 27.3682 78
cluster_6.pdb ( medoid) 10.5569 7.57796 30.1746 80
cluster_7.pdb ( medoid) 10.5396 7.30575 16.5209 77
cluster_8.pdb ( medoid) 4.16181 15.1376 40.4705 63
cluster_9.pdb ( medoid) 3.13544 9.88696 25.6157 31
cluster_10.pdb ( medoid) 1.93359 18.101 39.5166 35
Laboratory of Theory of Biopolymers 2015