Project name: a7879abebb0265b

Status: done

submitted: 2018-01-02 11:12:57, status changed: 2018-01-02 12:30:24

Project settings
Protein sequence(s) TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD input pdb
Peptide sequence SNPNQRLPKVEILRNAIRYI
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCHHHHHHHHHHHC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 57.2423 4.9963 26.4285 286
cluster_2.pdb ( medoid) 37.6256 2.55146 10.7324 96
cluster_3.pdb ( medoid) 20.6102 5.62828 12.6915 116
cluster_4.pdb ( medoid) 17.1456 6.29899 20.7434 108
cluster_5.pdb ( medoid) 15.1313 8.12884 19.2602 123
cluster_6.pdb ( medoid) 10.6182 6.30992 19.1656 67
cluster_7.pdb ( medoid) 9.74798 8.82234 24.6001 86
cluster_8.pdb ( medoid) 7.46778 6.82934 18.7957 51
cluster_9.pdb ( medoid) 6.75766 5.77123 21.8673 39
cluster_10.pdb ( medoid) 4.2055 6.65795 13.86 28

 
Laboratory of Theory of Biopolymers 2015