Project name: H31E5OK6B07 5eo1

Status: done

submitted: 2018-01-01 10:28:35, status changed: 2018-01-03 05:32:13

Project settings
Peptide sequence VYATLLLLI
Simulation mc cycles200
Peptide secondary structure psipred CEEEEEEEC
Unlikely to bind regions
0:B - 99:B 179:A - 275:A
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 40.1899 5.25008 17.085 211
cluster_2.pdb ( medoid) 31.7462 3.02398 28.2744 96
cluster_3.pdb ( medoid) 30.2324 2.94386 6.45593 89
cluster_4.pdb ( medoid) 23.1544 6.26231 47.3126 145
cluster_5.pdb ( medoid) 16.8566 9.61047 52.7558 162
cluster_6.pdb ( medoid) 16.4453 4.43897 24.5396 73
cluster_7.pdb ( medoid) 16.2048 3.45577 7.14628 56
cluster_8.pdb ( medoid) 15.7246 4.00646 32.578 63
cluster_9.pdb ( medoid) 11.2529 4.08784 14.9393 46
cluster_10.pdb ( medoid) 7.61146 7.75147 15.7012 59

Laboratory of Theory of Biopolymers 2015