Project name: 2fmf bound default 3 runA QDQVDDLLDSLGF ss: CHHHHHHHHHHCC

Status: done

submitted: 2015-02-23 11:19:13, status changed: 2015-03-13 11:16:16

Project settings
Peptide sequence QDQVDDLLDSLGF
Simulation mc cycles50
Peptide secondary structure CHHHHHHHHHHCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 62.024 2.14433 10.438 133
cluster_2.pdb ( medoid) 37.6072 3.00475 10.9755 113
cluster_3.pdb ( medoid) 29.4197 6.73019 28.2304 198
cluster_4.pdb ( medoid) 28.2243 4.14536 10.7039 117
cluster_5.pdb ( medoid) 21.0421 5.13256 12.6014 108
cluster_6.pdb ( medoid) 13.4051 5.2965 16.9987 71
cluster_7.pdb ( medoid) 6.81856 14.6658 34.3997 100
cluster_8.pdb ( medoid) 6.4931 6.4684 23.6805 42
cluster_9.pdb ( medoid) 3.71908 15.5953 34.7482 58
cluster_10.pdb ( medoid) 3.5151 17.0692 33.1809 60
Laboratory of Theory of Biopolymers 2015