Project name: 2vj0 bound default 3 runA PKGWVTFE ss: CCCCCCCC

Status: done

submitted: 2015-02-23 11:19:19, status changed: 2015-03-13 11:16:21

Project settings
Protein sequence(s) ILAPLAPGSEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVINIECISDFTEAPVLNIQFRYGGTFQNVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSALLEEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKDTVSQRLCELLSEQF input pdb
Peptide sequence PKGWVTFE
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
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model_4 View
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model_7 View
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model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
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Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 36.9552 3.70719 23.096 137
cluster_2.pdb ( medoid) 28.1885 6.17273 19.1054 174
cluster_3.pdb ( medoid) 20.6192 6.93527 26.5399 143
cluster_4.pdb ( medoid) 14.8795 6.2502 23.0744 93
cluster_5.pdb ( medoid) 14.1437 9.05 33.7375 128
cluster_6.pdb ( medoid) 10.8845 8.17677 29.4263 89
cluster_7.pdb ( medoid) 8.09018 13.4731 30.7269 109
cluster_8.pdb ( medoid) 5.08366 9.83543 21.1731 50
cluster_9.pdb ( medoid) 3.73104 15.2772 31.4402 57
cluster_10.pdb ( medoid) 1.6143 12.3893 27.4782 20
Laboratory of Theory of Biopolymers 2015