Project name: 1mfg bound default 2 runA EYLGLDVPV ss: CCCCCCEEC

Status: done

submitted: 2015-02-23 11:18:28, status changed: 2015-03-13 11:16:24

Project settings
Peptide sequence EYLGLDVPV
Simulation mc cycles50
Peptide secondary structure CCCCCCEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
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model_4 Download
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model_7 Download
model_8 Download
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model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 29.8135 4.89711 19.644 146
cluster_2.pdb ( medoid) 27.2342 6.57261 22.1899 179
cluster_3.pdb ( medoid) 23.3617 6.07831 23.8065 142
cluster_4.pdb ( medoid) 18.4592 6.60917 15.4547 122
cluster_5.pdb ( medoid) 16.1265 1.86029 10.6606 30
cluster_6.pdb ( medoid) 12.0588 6.21952 15.419 75
cluster_7.pdb ( medoid) 10.3078 7.95518 15.9311 82
cluster_8.pdb ( medoid) 9.58691 9.70073 24.4746 93
cluster_9.pdb ( medoid) 5.95941 11.5783 26.3009 69
cluster_10.pdb ( medoid) 5.56262 11.1458 21.0503 62
Laboratory of Theory of Biopolymers 2015