Project name: MYCMYB_IT1

Status: done

submitted: 2018-07-11 15:30:46, status changed: 2018-07-26 07:03:18

Project settings
Simulation mc cycles200
Peptide secondary structure psipred CCCCHHHHHHHHHHHHHHHHCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 65.6829 1.50724 4.48557 99
cluster_2.pdb ( medoid) 35.8014 4.41323 22.628 158
cluster_3.pdb ( medoid) 31.5044 3.55506 13.5054 112
cluster_4.pdb ( medoid) 25.2564 3.12792 10.1806 79
cluster_5.pdb ( medoid) 23.6435 5.24456 26.8356 124
cluster_6.pdb ( medoid) 21.7274 3.40583 11.9772 74
cluster_7.pdb ( medoid) 21.5621 3.98847 16.8427 86
cluster_8.pdb ( medoid) 20.3351 3.93408 9.83651 80
cluster_9.pdb ( medoid) 19.4661 3.49326 7.95065 68
cluster_10.pdb ( medoid) 10.2392 11.7197 27.6626 120

Laboratory of Theory of Biopolymers 2015