Project name: 1nvr bound default 2 runA ASVSA ss: CEEEC

Status: done

submitted: 2015-02-23 11:18:29, status changed: 2015-03-13 11:17:23

Project settings
Protein sequence(s) VPFVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKNIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKPLKKGA input pdb
Peptide sequence ASVSA
Simulation mc cycles50
Peptide secondary structure CEEEC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
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model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 30.3157 4.35418 23.0334 132
cluster_2.pdb ( medoid) 19.9443 6.56829 39.6857 131
cluster_3.pdb ( medoid) 15.5464 5.27453 18.1914 82
cluster_4.pdb ( medoid) 14.4513 6.78138 21.7449 98
cluster_5.pdb ( medoid) 14.341 10.5292 35.4129 151
cluster_6.pdb ( medoid) 11.1582 8.60356 36.6547 96
cluster_7.pdb ( medoid) 10.0242 9.17776 31.1956 92
cluster_8.pdb ( medoid) 9.74021 10.164 37.0652 99
cluster_9.pdb ( medoid) 5.26372 9.11903 41.4255 48
cluster_10.pdb ( medoid) 4.85066 14.6372 36.0835 71
Laboratory of Theory of Biopolymers 2015