Project name: 9B_pep9A

Status: done

submitted: 2018-01-13 21:50:32, status changed: 2018-01-13 23:53:51

Project settings
Peptide sequence PTTTEPTTTEPTTTE
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCCCCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 45.4582 2.77178 7.93359 126
cluster_2.pdb ( medoid) 23.2482 4.73155 28.6477 110
cluster_3.pdb ( medoid) 21.1084 5.25857 25.892 111
cluster_4.pdb ( medoid) 20.6026 6.64963 24.4763 137
cluster_5.pdb ( medoid) 11.938 10.4708 23.4066 125
cluster_6.pdb ( medoid) 9.33893 11.5645 34.0052 108
cluster_7.pdb ( medoid) 8.54597 10.6483 27.9382 91
cluster_8.pdb ( medoid) 6.88524 10.6024 30.0922 73
cluster_9.pdb ( medoid) 6.37206 8.4745 29.2461 54
cluster_10.pdb ( medoid) 6.10711 10.6433 24.799 65

Laboratory of Theory of Biopolymers 2015