Project name: 3POM unbound default 2 run A PPTLHELYDL ss: CCCHHHHCCC

Status: done

submitted: 2015-02-25 18:46:58, status changed: 2015-03-13 11:17:43

Project settings
Peptide sequence PPTLHELYDL
Simulation mc cycles50
Peptide secondary structure CCCHHHHCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 32.4796 6.55796 34.6653 213
cluster_2.pdb ( medoid) 31.4698 4.3216 22.3985 136
cluster_3.pdb ( medoid) 22.541 4.92435 26.9223 111
cluster_4.pdb ( medoid) 15.4232 6.6134 21.7533 102
cluster_5.pdb ( medoid) 14.0876 6.88548 15.0068 97
cluster_6.pdb ( medoid) 12.1068 5.9471 16.5024 72
cluster_7.pdb ( medoid) 11.7468 8.34268 32.111 98
cluster_8.pdb ( medoid) 9.79923 5.81678 12.7336 57
cluster_9.pdb ( medoid) 9.10811 5.37982 10.4814 49
cluster_10.pdb ( medoid) 4.58054 14.1905 32.5546 65
Laboratory of Theory of Biopolymers 2015